```{include} ../README.md
```

```{toctree}
:maxdepth: 1
:hidden:

example.ipynb
```

```{toctree}
:maxdepth: 1
:hidden:
:caption: Setup

docs_setup/installation.md
docs_setup/data.md
docs_setup/run_model.md
```

```{toctree}
:maxdepth: 1
:hidden:
:caption: Analysis

analysis.ipynb
docs_analysis/ensemble_runs.md
```

```{toctree}
:maxdepth: 1
:hidden:
:caption: Development

docs_dev/repo_management.md
docs_dev/workflow.md
docs_dev/todo_list.md
docs_dev/write_docs.md
docs_dev/troubleshooting.md
```

```{toctree}
:maxdepth: 1
:caption: Reference

autoapi/index
docs_ref/changelog.md
docs_ref/CONTRIBUTING.md
docs_ref/CONDUCT.md
docs_ref/license.md
```